Add basic tool_id search from Tool-shed
#82
Draft
+320
−19
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
To get default configuration section when none is provided.
For now just try to search for tool ids without parsing possible additional toolsheds or repositories.
This will produce less accurate results but order of magnitude faster. There is probably something that needs to be tweaked in the whoosh search in the toolshed for this to work with IDs only.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
You can now "partially" auto-complete the
tool_idif you roughly know the ID of the tool that you are going to use in a step.Writing an approximate ID and then invoking the intelli-sense (Ctrl+Space) will search the Galaxy ToolShed for possible tools.
You can specify which toolshed you want to query by changing the
galaxyWorkflows.toolshed.urlsetting.TODO
idonly search restriction is orders of magnitude faster at the cost of accuracy in the search, but we can live with this for now. See more details in What is the recommended/fastest way to search for tools in the Tool Shed API? galaxyproject/galaxy#18543